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NOTE THESE ARE NOT TO BE APPLIED TO 2.0 TESTING, USE THE QUICKSTARTS IN THE 2.0 ON-LINE DOCUMENTATION

Table of Contents

Table of Contents
excludeTable of Contents

...

This documentation provides a general tour to DAOS management commands (DMGdmg) for daos_admin, and DAOS tools (daos) for daos_client users. Including Provides help with pool and container create, list, query and destroy on a 2 hosts DAOS server and 1 host DAOS client environment. Example of DMG and DAOS commands option are provided. for daos_admin and daos_client users. Some frequent common errors user might see and workaround are provided. Setting and workarounds for new users when using the dmg and daos tools.  Example runs of data transfer between DAOS file systems, by setting up of DAOS dfuse mount point and run traffic with dfuse fio and mpirun mdtest. Runs with 4 Example of basic dmg and daos tools runs on 2 hosts DAOS server and example 1 host client, runs of DAOS rebuild and outputs are providedover dfuse fio and mpirun mdtest on a 4 hosts DAOS server.

Requirements

Set environment variables for list of servers, client and admin node.

Code Block
languagebash
export SERVER_NODES=node-1,node-2
export ADMIN_# Example of 2 hosts server
# For 1 host server, export SERVER_NODES=node-1
export SERVER_NODES=node-1,node-2
# Example to use admin and client on the same node
export ADMIN_NODE=node-3
export CLIENT_NODE=node-3
export ALL_NODES=$SERVER_NODES,$CLIENT_NODE

...

dmg system query

Code Block
languagebash
# system query output for a 2 hosts DAOS server
$ dmg system query
Rank  State  
----  -----  
[0-1] Joined  

...

dmg storage query usage

Code Block
languagebash
# system storage query usage output for a 2 hosts DAOS server
$ dmg storage query usage
Hosts   SCM-Total SCM-Free SCM-Used NVMe-Total NVMe-Free NVMe-Used 
-----   --------- -------- -------- ---------- --------- --------- 
boro-35 17 GB     17 GB    0 %      0 B        0 B       N/A       
boro-8  17 GB     17 GB    0 %      0 B        0 B       N/A        

dmg pool create help

Code Block
languagebash
$ dmg pool create --help
Usage:
  dmg [OPTIONS] pool create [create-OPTIONS]

Application Options:
      --allow-proxy    Allow proxy configuration via environment
  -l, --host-list=     comma separated list of addresses <ipv4addr/hostname>
  -i, --insecure       have dmg attempt to connect without certificates
  -d, --debug          enable debug output
  -j, --json           Enable JSON output
  -J, --json-logging   Enable JSON-formatted log output
  -o, --config-path=   Client config file path

Help Options:
  -h, --help           Show this help message

[create command options]
      -g, --group=     DAOS pool to be owned by given group, format name@domain
      -u, --user=      DAOS pool to be owned by given user, format name@domain
      -p, --name=      Unique name for pool (set as label)
      -a, --acl-file=  Access Control List file path for DAOS pool
      -z, --size=      Total size of DAOS pool (auto)
      -t, --scm-ratio= Percentage of SCM:NVMe for pool storage (auto) (default: 6)
      -k, --nranks=    Number of ranks to use (auto)
      -v, --nsvc=      Number of pool service replicas
      -s, --scm-size=  Per-server SCM allocation for DAOS pool (manual)
      -n, --nvme-size= Per-server NVMe allocation for DAOS pool (manual)
      -r, --ranks=     Storage server unique identifiers (ranks) for DAOS pool
      -S, --sys=       DAOS system that pool is to be a part of (default: daos_server)

dmg pool create

Code Block
languagebash
# Create a 10GB pool
$ dmg pool create --size=10G
Creating DAOS pool with automatic storage allocation: 10 GB NVMe + 6.00% SCM
Pool created with 100.00% SCM/NVMe ratio
-----------------------------------------
  UUID          : 0a6003c6-23a7-4cb5-8895-c004ca2b75f5
  Service Ranks : 0                                   
  Storage Ranks : [0-1]                               
  Total Size    : 10 GB                               
  SCM           : 10 GB (5.0 GB / rank)               
  NVMe          : 0 B (0 B / rank)                  

$ dmg storage query usage
Hosts   SCM-Total SCM-Free SCM-Used NVMe-Total NVMe-Free NVMe-Used 
-----   --------- -------- -------- ---------- --------- --------- 
boro-35 17 GB     12 GB    29 %     0 B        0 B       N/A       
boro-8  17 GB     11 GB    36 %     0 B        0 B       N/A

...

Code Block
languagebash
$ daos cont query  --pool=$DAOS_POOL --cont=$DAOS_CONT
Pool UUID:      528f4710-7eb8-4850-b6aa-09e4b3c8f532
Container UUID: bc4fe707-7470-4b7d-83bf-face75cc98fc
Number of snapshots: 0
Latest Persistent Snapshot: 0
Highest Aggregated Epoch: 172477977191481344
Container redundancy factor: 1

daos container snapshot help/create/list/destroy

Code Block
languagebash
$ daos help cont snapshotcreate-snap
daos command (v1.2), libdaos 1.2.0
container containeroptions (cont) commandssnapshot and rollback-related):
         --snap=NAME create       container snapshot   create a container(create/destroy-snap, rollback)
        --epc=EPOCHNUM   clone  container epoch (destroy-snap, rollback)
      clone a container --epcrange=B-E     container epoch range (destroy-snap)
container options destroy(query, and all commands except create):
    destroy a container    <pool options>   with --cont use: list(--objects  pool, --sys-name)
  list all objects in container    <pool options>   with --path  list-objuse: (--sys-name)
        --cont=UUID  query      (mandatory, or use --path)
  query a container    --path=PATHSTR

$ daos cont  create-snap get-prop         get all container's properties
          set-prop         set container's properties
          get-acl          get a container's ACL
          overwrite-acl    replace a container's ACL
          update-acl       add/modify entries in a container's ACL
          delete-acl       delete an entry from a container's ACL--pool=$DAOS_POOL --cont=$DAOS_CONT
snapshot/epoch 172646116775952384 has been created

$ daos container list-snaps --pool=$DAOS_POOL --cont=$DAOS_CONT
Container's snapshots :
172478166024060928 
172646116775952384 

$ daos container destroy-snap --pool=$DAOS_POOL --cont=$DAOS_CONT --epc=172646116775952384

$ daos container list-snaps --pool=$DAOS_POOL --cont=$DAOS_CONT
Container's snapshots :
172478166024060928 

Frequent errors user might see and workaround

use dmg command without daos_admin privilege

Code Block
languagebash
# Error message or timeout after dmg system query
$ dmg system query 
ERROR: dmg: Unable to load Certificate Data: could not load cert: stat /etc/daos/certs/admin.crt: no such file or directory

# Workaround
# 1. Make sure the admin-host /etc/daos/daos_control.yml is correctly configured. 
#    including:
#      hostlist: <daos_server_lists>
#      port: <port_num>
#      transport_config:
#        allow_insecure: <true/false>
#            set-owner ca_cert: /etc/daos/certs/daosCA.crt
#       change the user and/or group that own a containercert: /etc/daos/certs/admin.crt
#        key: /etc/daos/certs/admin.key
#
# 2. Make sure statthe admin-host allow_insecure mode match with the servers'.

use daos command before daos_agent started

Code Block
languagebash
$ daos cont create --pool=$DAOS_POOL
daos getERR container statistics
          check            check objects consistency in container
          list-attrs       list container user-defined attributes
          del-attr         delete container user-defined attribute
          get-attr         get container user-defined attribute
    src/common/drpc.c:217 unixcomm_connect() Failed to connect to /var/run/daos_agent/daos_agent.sock, errno=2(No such file or directory)
mgmt ERR  src/mgmt/cli_mgmt.c:222 get_attach_info() failed to connect to /var/run/daos_agent/daos_agent.sock DER_MISC(-1025): 'Miscellaneous error'
failed to initialize daos: Miscellaneous error (-1025)

# Work around to check for daos_agent certification and start daos_agent
$ #check for /etc/daos/certs/daosCA.crt, agent.crt and agent.key
$ sudo systemctl enable daos_agent.service
$ sudo systemctl start daos_agent.service

use daos command with invalid or wrong parameters

Code Block
languagebash
# Lack of providing daos pool_uuid
$ daos pool list-cont
pool UUID required
rc: 2
daos command (v1.2), libdaos 1.2.0
usage: daos RESOURCE COMMAND [OPTIONS]
resources:
      set-attr    pool     set container user-defined attribute     pool
     create-snap     container create(cont) container
snapshot (optional name)        filesystem (fs)  copy to and from a POSIX filesystem
          atobject most(obj) recent committed epoch  object
        list-snaps  shell     list container snapshots taken    Interactive obj ctl shell for DAOS
 destroy-snap     destroy container snapshots  version          print command version
          help   by name, epoch or range      print this message   rollback         roll back container to specified snapshot

and exit
use 'daos help cont|container COMMANDRESOURCE' for commandresource specificspecifics
options

daos container snapshot create/list/destroy

Code Block
languagebash
$ daos cont create-snap --pool=$DAOS_POOL --cont=$DAOS_CONT
snapshot/epoch 172646116775952384 has been created


# Invalid sub-command cont-list
$ daos containerpool cont-list-snaps --pool=$DAOS_POOL
--cont=$DAOS_CONT
Container's snapshots :
172478166024060928 
172646116775952384 

$ daos container destroy-snap --pool=$DAOS_POOL --cont=$DAOS_CONT --epc=172646116775952384

$ daos container list-snaps --pool=$DAOS_POOL --cont=$DAOS_CONT
Container's snapshots :
172478166024060928 

Frequent errors user might see and workaround

use dmg command without daos_admin privileges

Code Block
languagebash
$ dmg system query 
ERROR: dmg: Unable to load Certificate Data: could not load cert: stat /etc/daos/certs/admin.crt: no such file or directory
# or Node-hang after dmg system query command issued 

# Workaround
# 1. Make sure the admin-host /etc/daos/daos_control.yml is correctly configured. 
#    including:
#      hostlist: <daos_server_lists>
#      port: <port_num>
#      transport_config:
#        allow_insecure: <true/false>
#        ca_cert: /etc/daos/certs/daosCA.crt
#invalid pool command: cont-list
error parsing command line arguments
daos command (v1.2), libdaos 1.2.0
usage: daos RESOURCE COMMAND [OPTIONS]
resources:
          pool             pool
          container (cont) container
          filesystem (fs)  copy to and from a POSIX filesystem
          object (obj)     object
          shell            Interactive obj ctl shell for DAOS
        cert: /etc/daos/certs/admin.crt
# version        key: /etc/daos/certs/admin.key
#
# 2. Make sure the admin-host allow_insecure mode match with the servers'.

use daos command before daos_agent started

Code Block
languagebash
$ daos cont create --pool=$DAOS_POOL
daos ERR  src/common/drpc.c:217 unixcomm_connect() Failed to connect to /var/run/daos_agent/daos_agent.sock, errno=2(No such file or directory)
mgmt ERR  src/mgmt/cli_mgmt.c:222 get_attach_info() failed to connect to /var/run/daos_agent/daos_agent.sock DER_MISC(-1025): 'Miscellaneous error'
failed to initialize daos: Miscellaneous error (-1025)

# Work around to check for daos_agent certification and start daos_agent
$ #check for /etc/daos/certs/daosCA.crt, agent.crt and agent.key
$ sudo systemctl enable daos_agent.service
$ sudo systemctl start daos_agent.service

use daos command with invalid or wrong parameters

Code Block
languagebash
# Lack of providing daos pool_uuid
$ daos pool list-cont
pool UUID required
rc: 2
daos command (v1.2), libdaos 1.2.0
usage: daos RESOURCE COMMAND [OPTIONS]
resources:
          pool             pool
          container (cont) container
          filesystem (fs)  copy to and from a POSIX filesystem
          object (obj)     object
          shell print command version
          help             print this message and exit
use 'daos help RESOURCE' for resource specifics

# Working daos pool command
$ daos pool list-cont --pool=$DAOS_POOL
bc4fe707-7470-4b7d-83bf-face75cc98fc

dmg pool create failed due to no space

Code Block
languagebash
$ dmg pool create --size=50G
Creating DAOS pool with automatic storage allocation: 50 GB NVMe + 6.00% SCM
ERROR: dmg: pool create failed: DER_NOSPACE(-1007): No space on storage target

# Workaround: dmg storage query scan to find current available storage
$ dmg storage query usage
Hosts  SCM-Total SCM-Free SCM-Used NVMe-Total NVMe-Free NVMe-Used 
-----  --------- -------- -------- ---------- --------- --------- 
boro-8 17 GB     6.0 GB   65 %     0 B        0 B       N/A       

$ dmg pool create --size=2G
Creating DAOS pool with automatic storage allocation: 2.0 GB NVMe + 6.00% SCM
Pool created with 100.00% SCM/NVMe ratio
-----------------------------------------
  UUID             Interactive obj ctl shell for DAOS: b5ce2954-3f3e-4519-be04-ea298d776132
  Service Ranks : 0              version          print command version         
 help Storage Ranks : 0         print this message and exit use 'daos help RESOURCE' for resource specifics  # Invalid sub-command cont-list $ daos pool cont-list --pool=$DAOS_POOL invalid pool command: cont-list error
parsing command lineTotal argumentsSize daos command (v1.2), libdaos 1. : 2.0 usage:GB daos RESOURCE COMMAND [OPTIONS] resources:           pool             pool 
  SCM       container (cont) container  : 2.0 GB (2.0 GB / rank)   filesystem (fs)  copy to and from a POSIX filesystem  
  NVMe      object (obj)   : 0 objectB (0 B / rank)       shell            Interactive obj
ctl
shell$ fordmg DAOSstorage query usage
Hosts  SCM-Total SCM-Free SCM-Used NVMe-Total NVMe-Free NVMe-Used version
-----  --------- -------- -------- ---------- --------- --------- 
printboro-8 command17 versionGB     2.9 GB   83 % help    0 B        print0 thisB message and exit use 'daos help RESOURCE'N/A for resource specifics  # Working daos pool command
$ daos pool list-cont

dmg pool destroy timeout

Code Block
languagebash
# dmg pool destroy Timeout or failed due to pool has active container(s)
# Workaround pool destroy --force option

$ dmg pool destroy --pool=$DAOS_POOL bc4fe707-7470-4b7d-83bf-face75cc98fc

...

force
Pool-destroy command succeeded


Run with dfuse fio

required rpm

Code Block
languagebash
$ dmgsudo poolyum createinstall --size=50G
Creating DAOS pool with automatic storage allocation: 50 GB NVMe + 6.00% SCM
ERROR: dmg:y fio
or
$ sudo yum install -y daos-tests

run fio

Code Block
languagebash
$ dmg pool create failed: DER_NOSPACE(-1007): No space on storage target

# Workaround: dmg storage query scan to find current available storage
$ dmg storage query usage
Hosts  SCM-Total SCM-Free SCM-Used NVMe-Total NVMe-Free NVMe-Used 
-----  --------- -------- -------- ---------- --------- --------- 
boro-8 17 GB     6.0 GB   65 %     0 B        0 B       N/A       

$ dmg pool create --size=2G
Creating DAOS pool with automatic storage allocation: 2.0 GB NVMe + 6.00% SCM
Pool created with 100.00% SCM/NVMe ratio
-----------------------------------------
  UUID          : b5ce2954-3f3e-4519-be04-ea298d776132
  Service Ranks : 0                                   
  Storage Ranks : 0                                   
  Total Size    : 2.0 GB                              
  SCM           : 2.0 GB (2.0 GB / rank)              
  NVMe          : 0 B (0 B / rank)                    

$ dmg storage query usage
Hosts  SCM-Total SCM-Free SCM-Used NVMe-Total NVMe-Free NVMe-Used 
-----  --------- -------- -------- ---------- --------- --------- 
boro-8 17 GB     2.9 GB   83 %     0 B        0 B       N/A       

Test with dfuse fio

required rpm

Code Block
languagebash
$ sudo yum install -y fio
or
$ sudo yum install -y daos-tests

run fio

Code Block
languagebash
$ dmg pool create --size=10G
$ daos cont create --pool=$DAOS_POOL --type=POSIX
$ daos cont query --pool=$DAOS_POOL --cont=$DAOS_CONT
Pool UUID: f688f2ad-76ae-4368-8d1b-5697ca016a43
Container UUID: bcc5c793-60dc-4ec1-8bab-9d63ea18e794
Number of snapshots: 0
Latest Persistent Snapshot: 0
Highest Aggregated Epoch: 0
Container redundancy factor: 0
$ /usr/bin/mkdir /tmp/daos_test1
$ /usr/bin/touch /tmp/daos_test1/testfile
$ /usr/bin/df -h -t fuse.daos
df: no file systems processed
$ /usr/bin/dfuse --m=/tmp/daos_test1 --pool=$DAOS_POOL --cont=$DAOS_CONT
$ /usr/bin/df -h -t fuse.daos
Filesystem Size Used Avail Use% Mounted on
dfuse 954M 144K 954M 1% /tmp/daos_test1
$ /usr/bin/fio --name=random-write --ioengine=pvsync --rw=randwrite --bs=4k --size=128M --nrfiles=4 --directory=/tmp/daos_test1 --numjobs=8 --iodepth=16 --runtime=60 --time_based --direct=1 --buffered=0 --randrepeat=0 --norandommap --refill_buffers --group_reportingrandom-write: (g=0): rw=randwrite, bs=(R) 4096B-4096B, (W) 4096B-4096B, (T) 4096B-4096B, ioengine=pvsync, iodepth=16
...
fio-3.7
Starting 8 processes
random-write: Laying out IO files (4 files / total 128MiB)
random-write: Laying out IO files (4 files / total 128MiB)
random-write: Laying out IO files (4 files / total 128MiB)
random-write: Laying out IO files (4 files / total 128MiB)
random-write: Laying out IO files (4 files / total 128MiB)
random-write: Laying out IO files (4 files / total 128MiB)
random-write: Laying out IO files (4 files / total 128MiB)
random-write: Laying out IO files (4 files / total 128MiB)
write: IOPS=19.9k, BW=77.9MiB/s (81.7MB/s)(731MiB/9379msec)
clat (usec): min=224, max=6539, avg=399.16, stdev=70.52
lat (usec): min=224, max=6539, avg=399.19, stdev=70.52
clat percentiles (usec):
...
bw ( KiB/s): min= 9368, max=10096, per=12.50%, avg=9972.06, stdev=128.28, samples=144
iops : min= 2342, max= 2524, avg=2493.01, stdev=32.07, samples=144
lat (usec) : 250=0.01%, 500=96.81%, 750=3.17%, 1000=0.01%
lat (msec) : 10=0.01%
cpu : usr=0.43%, sys=1.05%, ctx=187242, majf=0, minf=488
IO depths : 1=100.0%, 2=0.0%, 4=0.0%, 8=0.0%, 16=0.0%, 32=0.0%, >=64=0.0%
submit : 0=0.0%, 4=100.0%, 8=0.0%, 16=0.0%, 32=0.0%, 64=0.0%, >=64=0.0%
complete : 0=0.1%, 4=100.0%, 8=0.0%, 16=0.0%, 32=0.0%, 64=0.0%, >=64=0.0%
issued rwts: total=0,187022,0,0 short=0,0,0,0 dropped=0,0,0,0
latency : target=0, window=0, percentile=100.00%, depth=16
Run status group 0 (all jobs):
WRITE: bw=77.9MiB/s (81.7MB/s), 77.9MiB/s-77.9MiB/s (81.7MB/s-81.7MB/s), io=731MiB (766MB), run=9379-9379msec
Code Block
languagebash
# Data after fio completed
$ ll /tmp/daos_test1
total 1048396
rw-rr- 1 user1 user1 33554432 Apr 21 23:28 random-write.0.0
rw-rr- 1 user1 user1 33546240 Apr 21 23:28 random-write.0.1
rw-rr- 1 user1 user1 33542144 Apr 21 23:28 random-write.0.2
rw-rr- 1 user1 user1 33554432 Apr 21 23:28 random-write.0.3
rw-rr- 1 user1 user1 33554432 Apr 21 23:28 random-write.1.0
rw-rr- 1 user1 user1 33554432 Apr 21 23:28 random-write.1.1
rw-rr- 1 user1 user1 33554432 Apr 21 23:28 random-write.1.2
rw-rr- 1 user1 user1 33554432 Apr 21 23:28 random-write.1.3
rw-rr- 1 user1 user1 33554432 Apr 21 23:28 random-write.2.0
rw-rr- 1 user1 user1 33554432 Apr 21 23:28 random-write.2.1
rw-rr- 1 user1 user1 33554432 Apr 21 23:28 random-write.2.2
rw-rr- 1 user1 user1 33554432 Apr 21 23:28 random-write.2.3
rw-rr- 1 user1 user1 33542144 Apr 21 23:28 random-write.3.0
rw-rr- 1 user1 user1 33550336 Apr 21 23:28 random-write.3.1
rw-rr- 1 user1 user1 33550336 Apr 21 23:28 random-write.3.2
rw-rr- 1 user1 user1 33542144 Apr 21 23:28 random-write.3.3
rw-rr- 1 user1 user1 33554432 Apr 21 23:28 random-write.4.0
rw-rr- 1 user1 user1 33525760 Apr 21 23:28 random-write.4.1
rw-rr- 1 user1 user1 33554432 Apr 21 23:28 random-write.4.2
rw-rr- 1 user1 user1 33550336 Apr 21 23:28 random-write.4.3
rw-rr- 1 user1 user1 33542144 Apr 21 23:28 random-write.5.0
rw-rr- 1 user1 user1 33546240 Apr 21 23:28 random-write.5.1
rw-rr- 1 user1 user1 33554432 Apr 21 23:28 random-write.5.2
rw-rr- 1 user1 user1 33554432 Apr 21 23:28 random-write.5.3
rw-rr- 1 user1 user1 33554432 Apr 21 23:28 random-write.6.0
rw-rr- 1 user1 user1 33550336 Apr 21 23:28 random-write.6.1
rw-rr- 1 user1 user1 33550336 Apr 21 23:28 random-write.6.2
rw-rr- 1 user1 user1 33554432 Apr 21 23:28 random-write.6.3
rw-rr- 1 user1 user1 33525760 Apr 21 23:28 random-write.7.0
rw-rr- 1 user1 user1 33554432 Apr 21 23:28 random-write.7.1
rw-rr- 1 user1 user1 33525760 Apr 21 23:28 random-write.7.2
rw-rr- 1 user1 user1 33542144 Apr 21 23:28 random-write.7.3

unmount

Code Block
languagebash
$ /usr/bin/fusermount -u /tmp/daos_test1/

$ /usr/bin/df -h -t fuse.daos
df: no file systems processed

Test with Mpirun

required rpms

Code Block
languagebash
$ sudo yum install -y mpich
$ sudo yum install -y mdtest
$ sudo yum install -y Lmod
$ sudo module load mpi/mpich-x86_64
$ /usr/bin/touch /tmp/daos_test1/testfile

run mpirun ior 

Code Block
languagebash
$ /usr/lib64/mpich/bin/mpirun -host <host1> -np 30 ior -a POSIX -b 26214400 -v -w -k -i 1 -o /tmp/daos_test1/testfile -t 25M
IOR-3.4.0+dev: MPI Coordinated Test of Parallel I/O
Began : Fri Apr 16 18:07:56 2021
Command line : ior -a POSIX -b 26214400 -v -w -k -i 1 -o /tmp/daos_test1/testfile -t 25M
Machine : Linux boro-8.boro.hpdd.intel.com
Start time skew across all tasks: 0.00 sec
TestID : 0
StartTime : Fri Apr 16 18:07:56 2021
Path : /tmp/daos_test1/testfile
FS : 3.8 GiB Used FS: 1.1% Inodes: 0.2 Mi Used Inodes: 0.1%
Participating tasks : 30
Options:
api : POSIX
apiVersion :
test filename : /tmp/daos_test1/testfile
access : single-shared-file
type : independent
segments : 1
ordering in a file : sequential
ordering inter file : no tasks offsets
nodes : 1
tasks : 30
clients per node : 30
repetitions : 1
xfersize : 25 MiB
blocksize : 25 MiB
aggregate filesize : 750 MiB
verbose : 1
Results:
access bw(MiB/s) IOPS Latency(s) block(KiB) xfer(KiB) open(s) wr/rd(s) close(s) total(s) iter
------ --------- ---- ---------- ---------- --------- -------- -------- -------- -------- ----
Commencing write performance test: Fri Apr 16 18:07:56 2021
write 1499.68 59.99 0.480781 25600 25600 0.300237 0.500064 0.483573 0.500107 0
Max Write: 1499.68 MiB/sec (1572.53 MB/sec)
Summary of all tests:
Operation Max(MiB) Min(MiB) Mean(MiB) StdDev Max(OPs) Min(OPs) Mean(OPs) StdDev Mean(s) Stonewall(s) Stonewall(MiB) Test# #Tasks tPN reps fPP reord reordoff reordrand seed segcnt blksiz xsize aggs(MiB) API RefNum
write 1499.68 1499.68 1499.68 0.00 59.99 59.99 59.99 0.00 0.50011 NA NA 0 30 30 1 0 0 1 0 0 1 26214400 26214400 750.0 POSIX 0
Finished : Fri Apr 16 18:07:57 2021


Mpirun mdtest
$ /usr/lib64/mpich/bin/mpirun -host <host1> -np 30 mdtest -a DFS -z 0 -F -C -i 1 -n 1667 -e 4096 -d / -w 4096 --dfs.chunk_size 1048576 --dfs.cont <container.uuid> --dfs.destroy --dfs.dir_oclass RP_3G1 --dfs.group daos_server --dfs.oclass RP_3G1 --dfs.pool <pool_uuid>
– started at 04/16/2021 22:01:55 –
mdtest-3.4.0+dev was launched with 30 total task(s) on 1 node(s)
Command line used: mdtest 'a' 'DFS' '-z' '0' '-F' '-C' '-i' '1' '-n' '1667' '-e' '4096' '-d' '/' '-w' '4096' 'dfs.chunk_size' '1048576' 'dfs.cont' '3e661024-2f1f-4d7a-9cd4-1b05601e0789' 'dfs.destroy' 'dfs.dir_oclass' 'SX' 'dfs.group' 'daos_server' 'dfs.oclass' 'SX' '-dfs.pool' 'd546a7f5-586c-4d8f-aecd-372878df7b97'
WARNING: unable to use realpath() on file system.
Path:
FS: 0.0 GiB Used FS: -nan% Inodes: 0.0 Mi Used Inodes: -nan%
Nodemap: 111111111111111111111111111111
30 tasks, 50010 files
SUMMARY rate: (of 1 iterations)
Operation Max Min Mean Std Dev
--------- — — ---- -------
File creation : 14206.584 14206.334 14206.511 0.072
File stat : 0.000 0.000 0.000 0.000
File read : 0.000 0.000 0.000 0.000
File removal : 0.000 0.000 0.000 0.000
Tree creation : 1869.791 1869.791 1869.791 0.000
Tree removal : 0.000 0.000 0.000 0.000
– finished at 04/16/2021 22:01:58 –

$ /usr/lib64/mpich/bin/mpirun -host <host1> -np 50 mdtest -a DFS -z 0 -F -C -i 1 -n 1667 -e 4096 -d / -w 4096 --dfs.chunk_size 1048576 --dfs.cont 3e661024-2f1f-4d7a-9cd4-1b05601e0789 --dfs.destroy --dfs.dir_oclass SX --dfs.group daos_server --dfs.oclass SX --dfs.pool d546a7f5-586c-4d8f-aecd-372878df7b97
– started at 04/16/2021 22:02:21 –
mdtest-3.4.0+dev was launched with 50 total task(s) on 1 node(s)
Command line used: mdtest 'a' 'DFS' '-z' '0' '-F' '-C' '-i' '1' '-n' '1667' '-e' '4096' '-d' '/' '-w' '4096' 'dfs.chunk_size' '1048576' 'dfs.cont' '3e661024-2f1f-4d7a-9cd4-1b05601e0789' 'dfs.destroy' 'dfs.dir_oclass' 'SX' 'dfs.group' 'daos_server' 'dfs.oclass' 'SX' '-dfs.pool' 'd546a7f5-586c-4d8f-aecd-372878df7b97'
WARNING: unable to use realpath() on file system.
Path:
FS: 0.0 GiB Used FS: -nan% Inodes: 0.0 Mi Used Inodes: -nan%
Nodemap: 11111111111111111111111111111111111111111111111111
50 tasks, 83350 files
SUMMARY rate: (of 1 iterations)
Operation Max Min Mean Std Dev
--------- — — ---- -------
File creation : 13342.303 13342.093 13342.228 0.059
File stat : 0.000 0.000 0.000 0.000
File read : 0.000 0.000 0.000 0.000
File removal : 0.000 0.000 0.000 0.000
Tree creation : 1782.938 1782.938 1782.938 0.000
Tree removal : 0.000 0.000 0.000 0.000
– finished at 04/16/2021 22:02:27 –

Run with 4 DAOS ranks server, rank-rebuild with dfuse_io and mpirun_ior

Environment variables setup

Code Block
languagebash
export SERVER_NODES=node-1,node-2,node-3,node-4
export ADMIN_NODE=node-5
export CLIENT_NODE=node-5
export ALL_NODES=$SERVER_NODES,$CLIENT_NODE

Run dfuse

No Format
# After DAOS servers and DAOS admin and client RPMs loaded 

$ dmg storage format
Format Summary:
  Hosts             SCM Devices NVMe Devices 
  -----             ----------- ------------ 
  boro-[8,35,52-53] 1           0              

$ dmg system query --verbose
Rank UUID                                 Control Address Fault Domain                 State  Reason 
---- ----                                 --------------- ------------                 -----  ------ 
0    739347b0-7db0-49a3-998f-acad65ff4615 10.7.1.8:10001  /boro-8.boro.hpdd.intel.com  Joined        
1    7273aded-e590-4028-8e85-9ea1ab42d411 10.7.1.52:10001 /boro-52.boro.hpdd.intel.com Joined        
2    d7ea954a-34e4-4671-bcde-047b26626fb4 10.7.1.53:10001 /boro-53.boro.hpdd.intel.com Joined        
3    e2772010-c587-4d33-b5a7-8b5edbc36011 10.7.1.35:10001 /boro-35.boro.hpdd.intel.com Joined        

$ dmg pool create --size=5G
Creating DAOS pool with automatic storage allocation: 5.0 GB NVMe + 6.00% SCM
Pool created with 100.00% SCM/NVMe ratio
-----------------------------------------
  UUID          : 733bee7b-c2af-499e-99dd-313b1ef092a9
  Service Ranks : [1-3]                               
  Storage Ranks : [0-3]                               
  Total Size    : 5.0 GB                              
  SCM           : 5.0 GB (1.3 GB / rank)              
  NVMe          : 0 B (0 B / rank) 

$ dmg pool list
Pool UUID                            Svc Replicas 
---------                            ------------ 
733bee7b-c2af-499e-99dd-313b1ef092a9 [1-3]        

$ daos cont create --pool=$DAOS_POOL --type=POSIX --oclass=RP_3G1 --properties=rf:2
Successfully created container 2649aa0f-3ad7-4943-abf5-4343205a637b

$ daos pool list-cont --pool=$DAOS_POOL
2649aa0f-3ad7-4943-abf5-4343205a637b

$ dmg pool query --pool=733bee7b-c2af-499e-99dd-313b1ef092a9
Pool 733bee7b-c2af-499e-99dd-313b1ef092a9, ntarget=32, disabled=0, leader=2, version=1
Pool space info:
- Target(VOS) count:32
- SCM:
  Total size: 5.0 GB
  Free: 5.0 GB, min:156 MB, max:156 MB, mean:156 MB
- NVMe:
  Total size: 0 B
  --size=10G
$ daos cont create --pool=$DAOS_POOL --type=POSIX
$ daos cont query --pool=$DAOS_POOL --cont=$DAOS_CONT
Pool UUID: f688f2ad-76ae-4368-8d1b-5697ca016a43
Container UUID: bcc5c793-60dc-4ec1-8bab-9d63ea18e794
Number of snapshots: 0
Latest Persistent Snapshot: 0
Highest Aggregated Epoch: 0
Container redundancy factor: 0
$ /usr/bin/mkdir /tmp/daos_test1
$ /usr/bin/touch /tmp/daos_test1/testfile
$ /usr/bin/df -h -t fuse.daos
df: no file systems processed
$ /usr/bin/dfuse --m=/tmp/daos_test1 --pool=$DAOS_POOL --cont=$DAOS_CONT
$ /usr/bin/df -h -t fuse.daos
Filesystem Size Used Avail Use% Mounted on
dfuse 954M 144K 954M 1% /tmp/daos_test1
$ /usr/bin/fio --name=random-write --ioengine=pvsync --rw=randwrite --bs=4k --size=128M --nrfiles=4 --directory=/tmp/daos_test1 --numjobs=8 --iodepth=16 --runtime=60 --time_based --direct=1 --buffered=0 --randrepeat=0 --norandommap --refill_buffers --group_reportingrandom-write: (g=0): rw=randwrite, bs=(R) 4096B-4096B, (W) 4096B-4096B, (T) 4096B-4096B, ioengine=pvsync, iodepth=16
...
fio-3.7
Starting 8 processes
random-write: Laying out IO files (4 files / total 128MiB)
random-write: Laying out IO files (4 files / total 128MiB)
random-write: Laying out IO files (4 files / total 128MiB)
random-write: Laying out IO files (4 files / total 128MiB)
random-write: Laying out IO files (4 files / total 128MiB)
random-write: Laying out IO files (4 files / total 128MiB)
random-write: Laying out IO files (4 files / total 128MiB)
random-write: Laying out IO files (4 files / total 128MiB)
write: IOPS=19.9k, BW=77.9MiB/s (81.7MB/s)(731MiB/9379msec)
clat (usec): min=224, max=6539, avg=399.16, stdev=70.52
lat (usec): min=224, max=6539, avg=399.19, stdev=70.52
clat percentiles (usec):
...
bw ( KiB/s): min= 9368, max=10096, per=12.50%, avg=9972.06, stdev=128.28, samples=144
iops : min= 2342, max= 2524, avg=2493.01, stdev=32.07, samples=144
lat (usec) : 250=0.01%, 500=96.81%, 750=3.17%, 1000=0.01%
lat (msec) : 10=0.01%
cpu : usr=0.43%, sys=1.05%, ctx=187242, majf=0, minf=488
IO depths : 1=100.0%, 2=0.0%, 4=0.0%, 8=0.0%, 16=0.0%, 32=0.0%, >=64=0.0%
submit : 0=0.0%, 4=100.0%, 8=0.0%, 16=0.0%, 32=0.0%, 64=0.0%, >=64=0.0%
complete : 0=0.1%, 4=100.0%, 8=0.0%, 16=0.0%, 32=0.0%, 64=0.0%, >=64=0.0%
issued rwts: total=0,187022,0,0 short=0,0,0,0 dropped=0,0,0,0
latency : target=0, window=0, percentile=100.00%, depth=16
Run status group 0 (all jobs):
WRITE: bw=77.9MiB/s (81.7MB/s), 77.9MiB/s-77.9MiB/s (81.7MB/s-81.7MB/s), io=731MiB (766MB), run=9379-9379msec


Code Block
languagebash
# Data after fio completed
$ ll /tmp/daos_test1
total 1048396
rw-rr- 1 user1 user1 33554432 Apr 21 23:28 random-write.0.0
rw-rr- 1 user1 user1 33546240 Apr 21 23:28 random-write.0.1
rw-rr- 1 user1 user1 33542144 Apr 21 23:28 random-write.0.2
rw-rr- 1 user1 user1 33554432 Apr 21 23:28 random-write.0.3
rw-rr- 1 user1 user1 33554432 Apr 21 23:28 random-write.1.0
rw-rr- 1 user1 user1 33554432 Apr 21 23:28 random-write.1.1
rw-rr- 1 user1 user1 33554432 Apr 21 23:28 random-write.1.2
rw-rr- 1 user1 user1 33554432 Apr 21 23:28 random-write.1.3
rw-rr- 1 user1 user1 33554432 Apr 21 23:28 random-write.2.0
rw-rr- 1 user1 user1 33554432 Apr 21 23:28 random-write.2.1
rw-rr- 1 user1 user1 33554432 Apr 21 23:28 random-write.2.2
rw-rr- 1 user1 user1 33554432 Apr 21 23:28 random-write.2.3
rw-rr- 1 user1 user1 33542144 Apr 21 23:28 random-write.3.0
rw-rr- 1 user1 user1 33550336 Apr 21 23:28 random-write.3.1
rw-rr- 1 user1 user1 33550336 Apr 21 23:28 random-write.3.2
rw-rr- 1 user1 user1 33542144 Apr 21 23:28 random-write.3.3
rw-rr- 1 user1 user1 33554432 Apr 21 23:28 random-write.4.0
rw-rr- 1 user1 user1 33525760 Apr 21 23:28 random-write.4.1
rw-rr- 1 user1 user1 33554432 Apr 21 23:28 random-write.4.2
rw-rr- 1 user1 user1 33550336 Apr 21 23:28 random-write.4.3
rw-rr- 1 user1 user1 33542144 Apr 21 23:28 random-write.5.0
rw-rr- 1 user1 user1 33546240 Apr 21 23:28 random-write.5.1
rw-rr- 1 user1 user1 33554432 Apr 21 23:28 random-write.5.2
rw-rr- 1 user1 user1 33554432 Apr 21 23:28 random-write.5.3
rw-rr- 1 user1 user1 33554432 Apr 21 23:28 random-write.6.0
rw-rr- 1 user1 user1 33550336 Apr 21 23:28 random-write.6.1
rw-rr- 1 user1 user1 33550336 Apr 21 23:28 random-write.6.2
rw-rr- 1 user1 user1 33554432 Apr 21 23:28 random-write.6.3
rw-rr- 1 user1 user1 33525760 Apr 21 23:28 random-write.7.0
rw-rr- 1 user1 user1 33554432 Apr 21 23:28 random-write.7.1
rw-rr- 1 user1 user1 33525760 Apr 21 23:28 random-write.7.2
rw-rr- 1 user1 user1 33542144 Apr 21 23:28 random-write.7.3

unmount

Code Block
languagebash
$ fusermount -u /tmp/daos_test1/

$ df -h -t fuse.daos
df: no file systems processed








Run with mpirun mdtest

required rpms

Code Block
languagebash
$ sudo yum install -y mpich
$ sudo yum install -y mdtest
$ sudo yum install -y Lmod
$ sudo module load mpi/mpich-x86_64
$ /usr/bin/touch /tmp/daos_test1/testfile

run mpirun ior and mdtest

Code Block
languagebash
# Run mpirun ior
$ /usr/lib64/mpich/bin/mpirun -host <host1> -np 30 ior -a POSIX -b 26214400 -v -w -k -i 1 -o /tmp/daos_test1/testfile -t 25M
IOR-3.4.0+dev: MPI Coordinated Test of Parallel I/O
Began : Fri Apr 16 18:07:56 2021
Command line : ior -a POSIX -b 26214400 -v -w -k -i 1 -o /tmp/daos_test1/testfile -t 25M
Machine : Linux boro-8.boro.hpdd.intel.com
Start time skew across all tasks: 0.00 sec
TestID : 0
StartTime : Fri Apr 16 18:07:56 2021
Path : /tmp/daos_test1/testfile
FS : 3.8 GiB Used FS: 1.1% Inodes: 0.2 Mi Used Inodes: 0.1%
Participating tasks : 30
Options:
api : POSIX
apiVersion :
test filename : /tmp/daos_test1/testfile
access : single-shared-file
type : independent
segments : 1
ordering in a file : sequential
ordering inter file : no tasks offsets
nodes : 1
tasks : 30
clients per node : 30
repetitions : 1
xfersize : 25 MiB
blocksize : 25 MiB
aggregate filesize : 750 MiB
verbose : 1
Results:
access bw(MiB/s) IOPS Latency(s) block(KiB) xfer(KiB) open(s) wr/rd(s) close(s) total(s) iter
------ --------- ---- ---------- ---------- --------- -------- -------- -------- -------- ----
Commencing write performance test: Fri Apr 16 18:07:56 2021
write 1499.68 59.99 0.480781 25600 25600 0.300237 0.500064 0.483573 0.500107 0
Max Write: 1499.68 MiB/sec (1572.53 MB/sec)
Summary of all tests:
Operation Max(MiB) Min(MiB) Mean(MiB) StdDev Max(OPs) Min(OPs) Mean(OPs) StdDev Mean(s) Stonewall(s) Stonewall(MiB) Test# #Tasks tPN reps fPP reord reordoff reordrand seed segcnt blksiz xsize aggs(MiB) API RefNum
write 1499.68 1499.68 1499.68 0.00 59.99 59.99 59.99 0.00 0.50011 NA NA 0 30 30 1 0 0 1 0 0 1 26214400 26214400 750.0 POSIX 0
Finished : Fri Apr 16 18:07:57 2021


# Run mpirun mdtest
$ /usr/lib64/mpich/bin/mpirun -host <host1> -np 30 mdtest -a DFS -z 0 -F -C -i 1 -n 1667 -e 4096 -d / -w 4096 --dfs.chunk_size 1048576 --dfs.cont <container.uuid> --dfs.destroy --dfs.dir_oclass RP_3G1 --dfs.group daos_server --dfs.oclass RP_3G1 --dfs.pool <pool_uuid>
– started at 04/16/2021 22:01:55 –
mdtest-3.4.0+dev was launched with 30 total task(s) on 1 node(s)
Command line used: mdtest 'a' 'DFS' '-z' '0' '-F' '-C' '-i' '1' '-n' '1667' '-e' '4096' '-d' '/' '-w' '4096' 'dfs.chunk_size' '1048576' 'dfs.cont' '3e661024-2f1f-4d7a-9cd4-1b05601e0789' 'dfs.destroy' 'dfs.dir_oclass' 'SX' 'dfs.group' 'daos_server' 'dfs.oclass' 'SX' '-dfs.pool' 'd546a7f5-586c-4d8f-aecd-372878df7b97'
WARNING: unable to use realpath() on file system.
Path:
FS: 0.0 GiB Used FS: -nan% Inodes: 0.0 Mi Used Inodes: -nan%
Nodemap: 111111111111111111111111111111
30 tasks, 50010 files
SUMMARY rate: (of 1 iterations)
Operation Max Min Mean Std Dev
--------- — — ---- -------
File creation : 14206.584 14206.334 14206.511 0.072
File stat : 0.000 0.000 0.000 0.000
File read : 0.000 0.000 0.000 0.000
File removal : 0.000 0.000 0.000 0.000
Tree creation : 1869.791 1869.791 1869.791 0.000
Tree removal : 0.000 0.000 0.000 0.000
– finished at 04/16/2021 22:01:58 –

$ /usr/lib64/mpich/bin/mpirun -host <host1> -np 50 mdtest -a DFS -z 0 -F -C -i 1 -n 1667 -e 4096 -d / -w 4096 --dfs.chunk_size 1048576 --dfs.cont 3e661024-2f1f-4d7a-9cd4-1b05601e0789 --dfs.destroy --dfs.dir_oclass SX --dfs.group daos_server --dfs.oclass SX --dfs.pool d546a7f5-586c-4d8f-aecd-372878df7b97
– started at 04/16/2021 22:02:21 –
mdtest-3.4.0+dev was launched with 50 total task(s) on 1 node(s)
Command line used: mdtest 'a' 'DFS' '-z' '0' '-F' '-C' '-i' '1' '-n' '1667' '-e' '4096' '-d' '/' '-w' '4096' 'dfs.chunk_size' '1048576' 'dfs.cont' '3e661024-2f1f-4d7a-9cd4-1b05601e0789' 'dfs.destroy' 'dfs.dir_oclass' 'SX' 'dfs.group' 'daos_server' 'dfs.oclass' 'SX' '-dfs.pool' 'd546a7f5-586c-4d8f-aecd-372878df7b97'
WARNING: unable to use realpath() on file system.
Path:
FS: 0.0 GiB Used FS: -nan% Inodes: 0.0 Mi Used Inodes: -nan%
Nodemap: 11111111111111111111111111111111111111111111111111
50 tasks, 83350 files
SUMMARY rate: (of 1 iterations)
Operation Max Min Mean Std Dev
--------- — — ---- -------
File creation : 13342.303 13342.093 13342.228 0.059
File stat : 0.000 0.000 0.000 0.000
File read : 0.000 0.000 0.000 0.000
File removal : 0.000 0.000 0.000 0.000
Tree creation : 1782.938 1782.938 1782.938 0.000
Tree removal : 0.000 0.000 0.000 0.000
– finished at 04/16/2021 22:02:27 –

Run with 4 DAOS hosts server, rebuild with dfuse_io and mpirun

Environment variables setup

Code Block
languagebash
export SERVER_NODES=node-1,node-2,node-3,node-4
export ADMIN_NODE=node-5
export CLIENT_NODE=node-5
export ALL_NODES=$SERVER_NODES,$CLIENT_NODE

Run dfuse

Code Block
languagebash
# Bring up 4 hosts server with appropriate daos_server.yml and
# access-point, reference to  DAOS Set-Up 
# After DAOS servers, DAOS admin and client started.

$ dmg storage format
Format Summary:
  Hosts             SCM Devices NVMe Devices 
  -----             ----------- ------------ 
  boro-[8,35,52-53] 1           0            

$ dmg pool list
Pool UUID Svc Replicas 
--------- ------------ 
733bee7b-c2af-499e-99dd-313b1ef092a9 
[1-3] 

$ daos cont create --pool=$DAOS_POOL --type=POSIX --oclass=RP_3G1 --properties=rf:2
Successfully created container 2649aa0f-3ad7-4943-abf5-4343205a637b 

$ daos pool list-cont --pool=$DAOS_POOL
2649aa0f-3ad7-4943-abf5-4343205a637b

$ dmg pool query --pool=$DAOS_POOL 
Pool 733bee7b-c2af-499e-99dd-313b1ef092a9, ntarget=32, disabled=0, leader=2, version=1 
Pool space info: 
- Target(VOS) count:32 
- SCM: 
  Total size: 5.0 GB 
  Free: 5.0 GB, min:156 MB, max:156 MB, mean:156 MB 
- NVMe: 
  Total size: 0 B 
  Free: 0 B, min:0 B, max:0 B, mean:0 B 
Rebuild idle, 0 objs, 0 recs

$ df -h -t fuse.daos
df: no file systems processed

$ mkdir /tmp/daos_test1

$ dfuse --mountpoint=/tmp/daos_test1 --pool=$DAOS_POOL --cont=$DAOS_CONT

$ df -h -t fuse.daos
Filesystem      Size  Used Avail Use% Mounted on
dfuse            19G  1.1M   19G   1% /tmp/daos_test1

$ fio --name=random-write --ioengine=pvsync --rw=randwrite --bs=4k --size=128M --nrfiles=4 --directory=/tmp/daos_test1 --numjobs=8 --iodepth=16 --runtime=60 --time_based --direct=1 --buffered=0 --randrepeat=0 --norandommap --refill_buffers --group_reporting
random-write: (g=0): rw=randwrite, bs=(R) 4096B-4096B, (W) 4096B-4096B, (T) 4096B-4096B, ioengine=pvsync, iodepth=16
...
fio-3.7
Starting 8 processes
random-write: Laying out IO files (4 files / total 128MiB)
random-write: Laying out IO files (4 files / total 128MiB)
random-write: Laying out IO files (4 files / total 128MiB)
random-write: Laying out IO files (4 files / total 128MiB)
random-write: Laying out IO files (4 files / total 128MiB)
random-write: Laying out IO files (4 files / total 128MiB)
random-write: Laying out IO files (4 files / total 128MiB)
random-write: Laying out IO files (4 files / total 128MiB)
Jobs: 8 (f=32): [w(8)][100.0%][r=0KiB/s,w=96.1MiB/s][r=0,w=24.6k IOPS][eta 00m:00s]
random-write: (groupid=0, jobs=8): err= 0: pid=27879: Sat Apr 17 01:12:57 2021
  write: IOPS=24.4k, BW=95.3MiB/s (99.9MB/s)(5716MiB/60001msec)
    clat (usec): min=220, max=6687, avg=326.19, stdev=55.29
     lat (usec): min=220, max=6687, avg=326.28, stdev=55.29
    clat percentiles (usec):
     |  1.00th=[  260],  5.00th=[  273], 10.00th=[  285], 20.00th=[  293],
     | 30.00th=[  306], 40.00th=[  314], 50.00th=[  322], 60.00th=[  330],
     | 70.00th=[  338], 80.00th=[  355], 90.00th=[  375], 95.00th=[  396],
     | 99.00th=[  445], 99.50th=[  465], 99.90th=[  523], 99.95th=[  562],
     | 99.99th=[ 1827]
   bw (  KiB/s): min=10976, max=12496, per=12.50%, avg=12191.82, stdev=157.87, samples=952
   iops        : min= 2744, max= 3124, avg=3047.92, stdev=39.47, samples=952
  lat (usec)   : 250=0.23%, 500=99.61%, 750=0.15%, 1000=0.01%
  lat (msec)   : 2=0.01%, 4=0.01%, 10=0.01%
  cpu          : usr=0.81%, sys=1.69%, ctx=1463535, majf=0, minf=308
  IO depths    : 1=100.0%, 2=0.0%, 4=0.0%, 8=0.0%, 16=0.0%, 32=0.0%, >=64=0.0%
     submit    : 0=0.0%, 4=100.0%, 8=0.0%, 16=0.0%, 32=0.0%, 64=0.0%, >=64=0.0%
     complete  : 0=0.0%, 4=100.0%, 8=0.0%, 16=0.0%, 32=0.0%, 64=0.0%, >=64=0.0%
     issued rwts: total=0,1463226,0,0 short=0,0,0,0 dropped=0,0,0,0
     latency   : target=0, window=0, percentile=100.00%, depth=16

Run status group 0 (all jobs):
  WRITE: bw=95.3MiB/s (99.9MB/s), 95.3MiB/s-95.3MiB/s (99.9MB/s-99.9MB/s), io=5716MiB (5993MB), run=60001-60001msec

Run dfuse with rebuild

Code Block
languagebash
# Start dfuse
$ fio --name=random-write --ioengine=pvsync --rw=randwrite --bs=4k --size=128M --nrfiles=4 --directory=/tmp/daos_test1 --numjobs=8 --iodepth=16 --runtime=60 --time_based --direct=1 --buffered=0 --randrepeat=0 --norandommap --refill_buffers --group_reporting

random-write: (g=0): rw=randwrite, bs=(R) 4096B-4096B, (W) 4096B-4096B, (T) 4096B-4096B, ioengine=pvsync, iodepth=16
...
fio-3.7
Starting 8 processes
fio: io_u error on file /tmp/daos_test1/random-write.2.1: Input/output error: write offset=8527872, buflen=4096
fio: pid=28242, err=5

file:io_u.c:1747
bw ( KiB/s): min= 3272, max=12384, per=30.14%, avg=11624.50, stdev=2181.01, samples=128
iops : min= 818, max= 3096, avg=2906.12, stdev=545.25, samples=128
lat (usec) : 250=0.23%, 500=99.59%, 750=0.12%, 1000=0.01%
lat (msec) : 2=0.03%, 4=0.02%
cpu : usr=0.27%, sys=0.66%, ctx=186210, majf=0, minf=494
IO depths : 1=100.0%, 2=0.0%, 4=0.0%, 8=0.0%, 16=0.0%, 32=0.0%, >=64=0.0%
submit : 0=0.0%, 4=100.0%, 8=0.0%, 16=0.0%, 32=0.0%, 64=0.0%, >=64=0.0%
complete : 0=0.1%, 4=100.0%, 8=0.0%, 16=0.0%, 32=0.0%, 64=0.0%, >=64=0.0%
issued rwts: total=0,186000,0,0 short=0,0,0,0 dropped=0,0,0,0
latency : target=0, window=0, percentile=100.00%, depth=16
Run status group 0 (all jobs):
WRITE: bw=37.7MiB/s (39.5MB/s), 37.7MiB/s-37.7MiB/s (39.5MB/s-39.5MB/s), io=727MiB (762MB), run=19291-19291msec
...


Code Block
languagebash
# from daos_admin console, stop leader-rank with debug
$ dmg -d system stop --ranks=3
DEBUG 01:34:58.026753 main.go:217: debug output enabled
DEBUG 01:34:58.027457 main.go:244: control config loaded from /etc/daos/daos_control.yml
Rank Operation Result
--------- ------
3 stop OK

$ daos pool list-cont --pool=$DAOS_POOL
cf2a95ce-9910-4d5e-814c-cafb0a7f0944

$ dmg pool query --pool=$DAOS_POOL
Pool 70f73efc-848e-4f6e-b4fd-909bcf9bd427,
ntarget=32,
disabled=8,
leader=2,
version=18
Pool space info:
Target(VOS) count:24
SCM:
Total size: 15 GB
Free: 14 GB, min:575 MB, max:597 MB, mean:587 MB
NVMe:
Total size: 0 B
Free: 0 B, min:0 B, max:0 B, mean:0 B
Rebuild idledone, 01 objs, 057 recs

Wiki Markup
$ dmg storage format
Format Summary:
  Hosts             SCM Devices NVMe Devices 
  -----             -# Verify stopped server been evicted
$ dmg system query -v
Rank UUID Control Address Fault Domain State Reason
---- ---------- ----- ------- 
  boro-[8,35,52-53] 1           0            

$ dmg pool list
Pool UUID Svc Replicas 
--------- ----- -------
0 733bee7b2bf0e083-c2af33d6-499e4ce3-99dd83c4-313b1ef092a9 
[1-3] 

$ daos cont create --pool=$DAOS_POOL --type=POSIX --oclass=RP_3G1 --properties=rf:2
Successfully created container 2649aa0f-3ad7-4943-abf5-4343205a637b 

$ daos pool list-cont --pool=$DAOS_POOL
2649aa0f-3ad7-4943-abf5-4343205a637b

$ dmg pool query --pool=$DAOS_POOL 
Pool 733bee7b-c2af-499e-99dd-313b1ef092a9, ntarget=32, disabled=0, leader=2, version=1 
Pool space info: 
- Target(VOS) count:32 
- SCM: 
  Total size: 5.0 GB 
  Free: 5.0 GB, min:156 MB, max:156 MB, mean:156 MB 
- NVMe: 
  Total size: 0 B 
  Free: 0 B, min:0 B, max:0 B, mean:0 B 
Rebuild idle, 0 objs, 0 recs

c898c2a7ddbd 10.7.1.8:10001 boro-8.boro.hpdd.intel.com Joined
1 c9ac1dd9-0f9d-4684-90d3-038b720fd26b 10.7.1.35:10001 boro-35.boro.hpdd.intel.com Joined
2 80e44fe9-3a2b-4808-9a0f-88c3cbe7f565 10.7.1.53:10001 boro-53.boro.hpdd.intel.com Joined
3 a26fd44a-6089-4cc3-a06b-278a85607fd3 10.7.1.52:10001 boro-52.boro.hpdd.intel.com Evicted system stop


Code Block
languagebash
# Restart, after evicted server restarted, verify the server joined
$ /usr/bin/dmg system query -v
Rank UUID Control Address Fault Domain State Reason 
---- --------------- ------------ ----- ------ 
0 2bf0e083-33d6-4ce3-83c4-c898c2a7ddbd 10.7.1.8:10001 /boro-8.boro.hpdd.intel.com Joined 
1 c9ac1dd9-0f9d-4684-90d3-038b720fd26b 10.7.1.35:10001 /boro-35.boro.hpdd.intel.com Joined 
2 80e44fe9-3a2b-4808-9a0f-88c3cbe7f565 10.7.1.53:10001 /boro-53.boro.hpdd.intel.com Joined 
3 a26fd44a-6089-4cc3-a06b-278a85607fd3 10.7.1.52:10001 /boro-52.boro.hpdd.intel.com Joined

# Unmount after test completed
$ fusermount -u /tmp/daos_test1/ 
$ df -h -t fuse.daos 
df: no file systems processed


Run mpirun mdtest with rebuild

Code Block
languagebash
$ mkdir /tmp/daos_test1
$ dfuse --m=/tmp/daos_test1 --pool=70f73efc-848e-4f6e-b4fd-909bcf9bd427 --cont=cf2a95ce-9910-4d5e-814c-cafb0a7f0944
$ df -h -t fuse.daos
Filesystem      Size  Used Avail Use% Mounted on
dfuse            19G  1.1M   19G   1% /tmp/daos_test1
$ fio --name=random-write --ioengine=pvsync --rw=randwrite --bs=4k --size=128M --nrfiles=4 --directory=/tmp/daos_test1 --numjobs=8 --iodepth=16 --runtime=60 --time_based --direct=1 --buffered=0 --randrepeat=0 --norandommap --refill_buffers --group_reporting
random-write: (g=0): rw=randwrite, bs=(R) 4096B-4096B, (W) 4096B-4096B, (T) 4096B-4096B, ioengine=pvsync, iodepth=16
...
fio-3.7
Starting 8 processes
random-write: Laying out IO files (4 files / total 128MiB)
random-write: Laying out IO files (4 files / total 128MiB)
random-write: Laying out IO files (4 files / total 128MiB)
random-write: Laying out IO files (4 files / total 128MiB)
random-write: Laying out IO files (4 files / total 128MiB)
random-write: Laying out IO files (4 files / total 128MiB)
random-write: Laying out IO files (4 files / total 128MiB)
random-write: Laying out IO files (4 files / total 128MiB)
Jobs: 8 (f=32): [w(8)][100.0%][r=0KiB/s,w=96.1MiB/s][r=0,w=24.6k IOPS][eta 00m:00s]
random-write: (groupid=0, jobs=8): err= 0: pid=27879: Sat Apr 17 01:12:57 2021
  write: IOPS=24.4k, BW=95.3MiB/s (99.9MB/s)(5716MiB/60001msec)
    clat (usec): min=220, max=6687, avg=326.19, stdev=55.29
     lat (usec): min=220, max=6687, avg=326.28, stdev=55.29
    clat percentiles (usec):
     |  1.00th=[  260],  5.00th=[  273], 10.00th=[  285], 20.00th=[  293],
     | 30.00th=[  306], 40.00th=[  314], 50.00th=[  322], 60.00th=[  330],
     | 70.00th=[  338], 80.00th=[  355], 90.00th=[  375], 95.00th=[  396],
     | 99.00th=[  445], 99.50th=[  465], 99.90th=[  523], 99.95th=[  562],
     | 99.99th=[ 1827]
   bw (  KiB/s): min=10976, max=12496, per=12.50%, avg=12191.82, stdev=157.87, samples=952
   iops        : min= 2744, max= 3124, avg=3047.92, stdev=39.47, samples=952
  lat (usec)   : 250=0.23%, 500=99.61%, 750=0.15%, 1000=0.01%
  lat (msec)   : 2=0.01%, 4=0.01%, 10=0.01%
  cpu          : usr=0.81%, sys=1.69%, ctx=1463535, majf=0, minf=308
  IO depths    : 1=100.0%, 2=0.0%, 4=0.0%, 8=0.0%, 16=0.0%, 32=0.0%, >=64=0.0%
     submit    : 0=0.0%, 4=100.0%, 8=0.0%, 16=0.0%, 32=0.0%, 64=0.0%, >=64=0.0%
     complete  : 0=0.0%, 4=100.0%, 8=0.0%, 16=0.0%, 32=0.0%, 64=0.0%, >=64=0.0%
     issued rwts: total=0,1463226,0,0 short=0,0,0,0 dropped=0,0,0,0
     latency   : target=0, window=0, percentile=100.00%, depth=16

Run status group 0 (all jobs):
  WRITE: bw=95.3MiB/s (99.9MB/s), 95.3MiB/s-95.3MiB/s (99.9MB/s-99.9MB/s), io=5716MiB (5993MB), run=60001-60001msec
   

Dfuse with leader-rank rebuild:

$ fio --name=random-write --ioengine=pvsync --rw=randwrite --bs=4k --size=128M --nrfiles=4 --directory=/tmp/daos_test1 --numjobs=8 --iodepth=16 --runtime=60 --time_based --direct=1 --buffered=0 --randrepeat=0 --norandommap --refill_buffers --group_reporting

No Format
random-write: (g=0): rw=randwrite, bs=(R) 4096B-4096B, (W) 4096B-4096B, (T) 4096B-4096B, ioengine=pvsync, iodepth=16
...
fio-3.7
Starting 8 processes
fio: io_u error on file /tmp/daos_test1/random-write.2.1: Input/output error: write offset=8527872, buflen=4096
fio: pid=28242, err=5

file:io_u.c:1747
bw ( KiB/s): min= 3272, max=12384, per=30.14%, avg=11624.50, stdev=2181.01, samples=128
iops : min= 818, max= 3096, avg=2906.12, stdev=545.25, samples=128
lat (usec) : 250=0.23%, 500=99.59%, 750=0.12%, 1000=0.01%
lat (msec) : 2=0.03%, 4=0.02%
cpu : usr=0.27%, sys=0.66%, ctx=186210, majf=0, minf=494
IO depths : 1=100.0%, 2=0.0%, 4=0.0%, 8=0.0%, 16=0.0%, 32=0.0%, >=64=0.0%
submit : 0=0.0%, 4=100.0%, 8=0.0%, 16=0.0%, 32=0.0%, 64=0.0%, >=64=0.0%
complete : 0=0.1%, 4=100.0%, 8=0.0%, 16=0.0%, 32=0.0%, 64=0.0%, >=64=0.0%
issued rwts: total=0,186000,0,0 short=0,0,0,0 dropped=0,0,0,0
latency : target=0, window=0, percentile=100.00%, depth=16
Run status group 0 (all jobs):
WRITE: bw=37.7MiB/s (39.5MB/s), 37.7MiB/s-37.7MiB/s (39.5MB/s-39.5MB/s), io=727MiB (762MB), run=19291-19291msec

$ /usr/bin/dmg -o /etc/daos/daos_control.yml -d system stop --ranks=3
DEBUG 01:34:58.026753 main.go:217: debug output enabled
DEBUG 01:34:58.027457 main.go:244: control config loaded from /etc/daos/daos_control.yml
Rank Operation Result

--------- ------
3 stop OK

$ /usr/bin/dmg pool query -j --pool=$DAOS_POOL

No Format
$ dmg pool query --pool=733bee7b-c2af-499e-99dd-313b1ef092a9
Pool 733bee7b-c2af-499e-99dd-313b1ef092a9, ntarget=32, disabled=0, leader=2, version=1
Pool space info:
- Target(VOS) count:32
- SCM:
  Total size: 5.0 GB
  Free: 5.0 GB, min:156 MB, max:156 MB, mean:156 MB
- NVMe:
  Total size: 0 B
  Free: 0 B, min:0 B, max:0 B, mean:0 B
Rebuild idle, 0 objs, 0 recs

$ dmg pool list
Pool UUID Svc Replicas

------------

70f73efc-848e-4f6e-b4fd-909bcf9bd427 [1-2]

$ daos pool list-cont --pool=$DAOS_POOL

cf2a95ce-9910-4d5e-814c-cafb0a7f0944

$ dmg pool query --pool=$DAOS_POOL

Pool 70f73efc-848e-4f6e-b4fd-909bcf9bd427,

ntarget=32,

disabled=8,

leader=2,

version=18

Pool space info:

Target(VOS) count:24

SCM:
Total size: 15 GB
Free: 14 GB, min:575 MB, max:597 MB, mean:587 MB

NVMe:
Total size: 0 B
Free: 0 B, min:0 B, max:0 B, mean:0 B
Rebuild done, 1 objs, 57 recs

...

---- --------------- ------------ ----- ------
0 2bf0e083-33d6-4ce3-83c4-c898c2a7ddbd 10.7.1.8:10001 boro-8.boro.hpdd.intel.com Joined
1 c9ac1dd9-0f9d-4684-90d3-038b720fd26b 10.7.1.35:10001 boro-35.boro.hpdd.intel.com Joined
2 80e44fe9-3a2b-4808-9a0f-88c3cbe7f565 10.7.1.53:10001 boro-53.boro.hpdd.intel.com Joined
3 a26fd44a-6089-4cc3-a06b-278a85607fd3 10.7.1.52:10001 boro-52.boro.hpdd.intel.com Evicted system stop

$ /usr/bin/dmg system query -v
Rank UUID Control Address Fault Domain State Reason

---- --------------- ------------ ----- ------
0 2bf0e083-33d6-4ce3-83c4-c898c2a7ddbd 10.7.1.8:10001 /boro-8.boro.hpdd.intel.com Joined
1 c9ac1dd9-0f9d-4684-90d3-038b720fd26b 10.7.1.35:10001 /boro-35.boro.hpdd.intel.com Joined
2 80e44fe9-3a2b-4808-9a0f-88c3cbe7f565 10.7.1.53:10001 /boro-53.boro.hpdd.intel.com Joined
3 a26fd44a-6089-4cc3-a06b-278a85607fd3 10.7.1.52:10001 /boro-52.boro.hpdd.intel.com Joined

$ df -h -t fuse.daos
Filesystem Size Used Avail Use% Mounted on
dfuse 14G 867M 14G 7% /tmp/daos_test1

$ fio --name=random-write --ioengine=pvsync --rw=randwrite --bs=4k --size=128M --nrfiles=4 --directory=/tmp/daos_test1 --numjobs=8 --iodepth=16 --runtime=60 --time_based --direct=1 --buffered=0 --randrepeat=0 --norandommap --refill_buffers --group_reporting
random-write: (g=0): rw=randwrite, bs=(R) 4096B-4096B, (W) 4096B-4096B, (T) 4096B-4096B, ioengine=pvsync, iodepth=16
...
fio-3.7
Starting 8 processes file:filesetup.c:349, func=fstat, error=Input/output error
Run status group 0 (all jobs):

$ fusermount -u /tmp/daos_test1/

$ dmg pool list
Pool UUID Svc Replicas

------------

70f73efc-848e-4f6e-b4fd-909bcf9bd427 [1-2]

$ daos pool list-cont --pool=<pool-id>

cf2a95ce-9910-4d5e-814c-cafb0a7f0944

$ dfuse --m=/tmp/daos_test1 --pool=<pool-id> --cont=<pool-id>

$ dmg -o /etc/daos/daos_control.yml -d system stop --ranks=2

No Format
DEBUG 02:01:54.916742 main.go:217: debug output enabled
DEBUG 02:01:54.917508 main.go:244: control config loaded from /etc/daos/daos_control.yml
DEBUG 02:01:54.920913 system.go:568: DAOS system stop request: &{unaryRequest:{request:{deadline:{wall:0 ext:0 loc:<nil>} Sys: HostList:[]} rpc:0xd1cf60} msRequest:{} sysRequest:{Ranks:{RWMutex:{w:{state:0 sema:0} writerSem:0 readerSem:0 readerCount:0 readerWait:0} HostSet:{Mutex:{state:0 sema:0} list:0xc00029d340}} Hosts:{Mutex:{state:0 sema:0} list:0xc00029d300}} Prep:true Kill:true Force:false}
DEBUG 02:01:54.921844 rpc.go:196: request hosts: [boro-8:10001 boro-35:10001] 
Rank Operation Result
--------- ------
2 stop OK

$ dmg pool create --size=50G

No Format
Creating DAOS pool with automatic storage allocation: 50 GB NVMe + 6.00% SCM
Pool created with 100.00% SCM/NVMe ratio
-----------------------------------------
  UUID          : 4eda8a8c-028c-461c-afd3-704534961572
  Service Ranks : [1-3]                               
  Storage Ranks : [0-3]                               
  Total Size    : 50 GB                               
  SCM           : 50 GB (12 GB / rank)                
  NVMe          : 0 B (0 B / rank)

$ daos cont create --pool=$DAOS_POOL --type=POSIX --oclass=RP_3G1 --properties=rf:2

Successfully created container d71ff6a5-15a5-43fe-b829-bef9c65b9ccb

$ /usr/lib64/mpich/bin/mpirun -host boro-8 -np 30 mdtest -a DFS -z 0 -F -C -i 100 -n 1667 -e 4096 -d / -w 4096 --dfs.chunk_size 1048576 --dfs.cont $DAOS_CONT --dfs.destroy --dfs.dir_oclass RP_3G1 --dfs.group daos_server --dfs.oclass RP_3G1 --dfs.pool $DAOS_POOL

started at 04/22/2021 17:46:20 –
mdtest-3.4.0+dev was launched with 30 total task(s) on 1 node(s)
Command line used: mdtest 'a' 'DFS' '-z' '0' '-F' '-C' '-i' '100' '-n' '1667' '-e' '4096' '-d' '/' '-w' '4096' 'dfs.chunk_size' '1048576' 'dfs.cont' 'd71ff6a5-15a5-43fe-b829-bef9c65b9ccb' 'dfs.destroy' 'dfs.dir_oclass' 'RP_3G1' 'dfs.group' 'daos_server' 'dfs.oclass' 'RP_3G1' '-dfs.pool' '4eda8a8c-028c-461c-afd3-704534961572'
WARNING: unable to use realpath() on file system.
Path:
FS: 0.0 GiB Used FS: -nan% Inodes: 0.0 Mi Used Inodes: -nan%
Nodemap: 111111111111111111111111111111
30 tasks, 50010 files

$ dmg system stop --ranks=3

Rank Operation Result
--------- ------
3 stop OK

Clean-Up

noformat
dmg pool create --size=50G
Creating DAOS pool with automatic storage allocation: 50 GB NVMe + 6.00% SCM 
Pool created with 100.00% SCM/NVMe ratio 
-----------------------------------------
 UUID : 4eda8a8c-028c-461c-afd3-704534961572
 Service Ranks : [1-3]
 Storage Ranks : [0-3]
 Total Size : 50 GB
 SCM : 50 GB (12 GB / rank)
 NVMe : 0 B (0 B / rank)

$ daos cont create --pool=$DAOS_POOL --type=POSIX --oclass=RP_3G1 --properties=rf:2
Successfully created container d71ff6a5-15a5-43fe-b829-bef9c65b9ccb

$ /usr/lib64/mpich/bin/mpirun -host boro-8 -np 30 mdtest -a DFS -z 0 -F -C -i 100 -n 1667 -e 4096 -d / -w 4096 --dfs.chunk_size 1048576 --dfs.cont $DAOS_CONT --dfs.destroy --dfs.dir_oclass RP_3G1 --dfs.group daos_server --dfs.oclass RP_3G1 --dfs.pool $DAOS_POOL

started at 04/22/2021 17:46:20 –
mdtest-3.4.0+dev was launched with 30 total task(s) on 1 node(s)
Command line used: mdtest 'a' 'DFS' '-z' '0' '-F' '-C' '-i' '100' '-n' '1667' '-e' '4096' '-d' '/' '-w' '4096' 'dfs.chunk_size' '1048576' 'dfs.cont' 'd71ff6a5-15a5-43fe-b829-bef9c65b9ccb' 'dfs.destroy' 'dfs.dir_oclass' 'RP_3G1' 'dfs.group' 'daos_server' 'dfs.oclass' 'RP_3G1' '-dfs.pool' '4eda8a8c-028c-461c-afd3-704534961572'
WARNING: unable to use realpath() on file system.
Path:
FS: 0.0 GiB Used FS: -nan% Inodes: 0.0 Mi Used Inodes: -nan%
Nodemap: 111111111111111111111111111111
30 tasks, 50010 files
...


Code Block
languagebash
# from daos_admin console, stop a server rank
$ dmg system stop --ranks=2
Rank Operation Result
--------- ------
2 stop OK

# Verify stopped server been evicted 
$ dmg system query -v 
Rank UUID Control Address Fault Domain State Reason
 ---- --------------- ------------ ----- ------
 0 2bf0e083-33d6-4ce3-83c4-c898c2a7ddbd 10.7.1.8:10001 boro-8.boro.hpdd.intel.com Joined
 1 c9ac1dd9-0f9d-4684-90d3-038b720fd26b 10.7.1.35:10001 boro-35.boro.hpdd.intel.com Joined
 2 80e44fe9-3a2b-4808-9a0f-88c3cbe7f565 10.7.1.53:10001 boro-53.boro.hpdd.intel.com Evicted system stop
 3 a26fd44a-6089-4cc3-a06b-278a85607fd3 10.7.1.52:10001 boro-52.boro.hpdd.intel.com Joined


Code Block
languagebash
# Restart, after evicted server restarted, verify the server joined
$ /usr/bin/dmg system query -v
 Rank UUID Control Address Fault Domain State Reason
 ---- --------------- ------------ ----- ------
 0 2bf0e083-33d6-4ce3-83c4-c898c2a7ddbd 10.7.1.8:10001 /boro-8.boro.hpdd.intel.com Joined
 1 c9ac1dd9-0f9d-4684-90d3-038b720fd26b 10.7.1.35:10001 /boro-35.boro.hpdd.intel.com Joined
 2 80e44fe9-3a2b-4808-9a0f-88c3cbe7f565 10.7.1.53:10001 /boro-53.boro.hpdd.intel.com Joined
 3 a26fd44a-6089-4cc3-a06b-278a85607fd3 10.7.1.52:10001 /boro-52.boro.hpdd.intel.com Joined


Clean-Up

Code Block
languagebash
# pool reintegrate
$ dmg pool reintegrate --pool=$DAOS_POOL --rank=32
Reintegration command succeeded

# destroy container
$ daos container destroy --pool=$DAOS_POOL --cont=$DAOS_CONT

# destroy pool
$ dmg pool destroy --pool=$DAOS_POOL
Pool-destroy command succeeded

# stop clients
$ pdsh -S -w $CLIENT_NODES "sudo systemctl stop daos_agent.service"

# disable clients
$ pdsh -S -w $CLIENT_NODES "sudo systemctl disable daos_agent.service"

# stop servers
$ pdsh -S -w $SERVER_NODES "sudo systemctl stop daos_server.service"

# disable servers
$ pdsh -S -w $SERVER_NODES "sudo systemctl disable daos_server.service"



...